SIX4

Protein-coding gene in the species Homo sapiens
SIX4
Identifiers
AliasesSIX4, AREC3, SIX homeobox 4
External IDsOMIM: 606342; MGI: 106034; HomoloGene: 69089; GeneCards: SIX4; OMA:SIX4 - orthologs
Gene location (Human)
Chromosome 14 (human)
Chr.Chromosome 14 (human)[1]
Chromosome 14 (human)
Genomic location for SIX4
Genomic location for SIX4
Band14q23.1Start60,709,539 bp[1]
End60,724,351 bp[1]
Gene location (Mouse)
Chromosome 12 (mouse)
Chr.Chromosome 12 (mouse)[2]
Chromosome 12 (mouse)
Genomic location for SIX4
Genomic location for SIX4
Band12|12 C3Start73,146,383 bp[2]
End73,160,230 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • bronchial epithelial cell

  • vastus lateralis muscle

  • Skeletal muscle tissue of biceps brachii

  • Skeletal muscle tissue of rectus abdominis

  • deltoid muscle

  • nasal epithelium

  • mucosa of paranasal sinus

  • cartilage tissue

  • parotid gland

  • epithelium of nasopharynx
Top expressed in
  • lumbar spinal ganglion

  • intercostal muscle

  • maxillary prominence

  • parotid gland

  • utricle

  • foot

  • soleus muscle

  • digastric muscle

  • mandibular prominence

  • lobe of prostate
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • sequence-specific DNA binding
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • DNA-binding transcription factor activity
  • DNA binding
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • transcription cis-regulatory region binding
Cellular component
  • cytoplasm
  • nucleus
  • transcription regulator complex
Biological process
  • tongue development
  • trigeminal ganglion development
  • sarcomere organization
  • generation of neurons
  • regulation of branch elongation involved in ureteric bud branching
  • negative regulation of apoptotic process
  • positive regulation of branching involved in ureteric bud morphogenesis
  • transcription, DNA-templated
  • multicellular organism development
  • negative regulation of satellite cell differentiation
  • pharyngeal system development
  • anatomical structure morphogenesis
  • embryonic skeletal system morphogenesis
  • inner ear morphogenesis
  • myotome development
  • fungiform papilla morphogenesis
  • skeletal muscle fiber differentiation
  • positive regulation of ureteric bud formation
  • regulation of gene expression
  • embryonic cranial skeleton morphogenesis
  • anatomical structure development
  • regulation of synaptic assembly at neuromuscular junction
  • olfactory placode formation
  • myoblast migration
  • thymus development
  • positive regulation of transcription, DNA-templated
  • regulation of epithelial cell proliferation
  • metanephric mesenchyme development
  • male sex determination
  • skeletal muscle tissue development
  • negative regulation of neuron apoptotic process
  • regulation of protein localization
  • male sex differentiation
  • regulation of transcription, DNA-templated
  • positive regulation of transcription by RNA polymerase II
  • transcription by RNA polymerase II
  • male gonad development
  • negative regulation of transcription, DNA-templated
  • protein localization to nucleus
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51804

20474

Ensembl

ENSG00000100625

ENSMUSG00000034460

UniProt

Q9UIU6

Q61321

RefSeq (mRNA)

NM_017420

NM_011382
NM_001362272

RefSeq (protein)

NP_059116

NP_035512
NP_001349201

Location (UCSC)Chr 14: 60.71 – 60.72 MbChr 12: 73.15 – 73.16 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein SIX4 is a protein that in humans is encoded by the SIX4 gene.[5][6][7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000100625 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000034460 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Gallardo ME, Lopez-Rios J, Fernaud-Espinosa I, Granadino B, Sanz R, Ramos C, Ayuso C, Seller MJ, Brunner HG, Bovolenta P, Rodriguez de Cordoba S (Nov 1999). "Genomic cloning and characterization of the human homeobox gene SIX6 reveals a cluster of SIX genes in chromosome 14 and associates SIX6 hemizygosity with bilateral anophthalmia and pituitary anomalies". Genomics. 61 (1): 82–91. doi:10.1006/geno.1999.5916. PMID 10512683.
  6. ^ Ozaki H, Yamada K, Kobayashi M, Asakawa S, Minoshima S, Shimizu N, Kajitani M, Kawakami K (May 2000). "Structure and chromosome mapping of the human SIX4 and murine Six4 genes". Cytogenet Cell Genet. 87 (1–2): 108–12. doi:10.1159/000015407. PMID 10640827. S2CID 28013542.
  7. ^ "Entrez Gene: SIX4 sine oculis homeobox homolog 4 (Drosophila)".

Further reading

  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • López-Ríos J, Tessmar K, Loosli F, et al. (2003). "Six3 and Six6 activity is modulated by members of the groucho family". Development. 130 (1): 185–95. doi:10.1242/dev.00185. PMID 12441302.
  • Ikeda K, Watanabe Y, Ohto H, Kawakami K (2002). "Molecular interaction and synergistic activation of a promoter by Six, Eya, and Dach proteins mediated through CREB binding protein". Mol. Cell. Biol. 22 (19): 6759–66. doi:10.1128/MCB.22.19.6759-6766.2002. PMC 134036. PMID 12215533.
  • Fan X, Brass LF, Poncz M, et al. (2000). "The alpha subunits of Gz and Gi interact with the eyes absent transcription cofactor Eya2, preventing its interaction with the six class of homeodomain-containing proteins". J. Biol. Chem. 275 (41): 32129–34. doi:10.1074/jbc.M004577200. PMID 10906137.
  • Kawakami K, Ohto H, Ikeda K, Roeder RG (1996). "Structure, function and expression of a murine homeobox protein AREC3, a homologue of Drosophila sine oculis gene product, and implication in development". Nucleic Acids Res. 24 (2): 303–10. doi:10.1093/nar/24.2.303. PMC 145635. PMID 8628654.
  • v
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(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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