COMMD9

Protein-coding gene in humans
COMMD9
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

4NKN, 4OE9

Identifiers
AliasesCOMMD9, HSPC166, COMM domain containing 9, C11orf55, LINC00610
External IDsOMIM: 612299; MGI: 1923751; HomoloGene: 8584; GeneCards: COMMD9; OMA:COMMD9 - orthologs
Gene location (Human)
Chromosome 11 (human)
Chr.Chromosome 11 (human)[1]
Chromosome 11 (human)
Genomic location for COMMD9
Genomic location for COMMD9
Band11p13Start36,269,284 bp[1]
End36,289,449 bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for COMMD9
Genomic location for COMMD9
Band2|2 E2Start101,716,592 bp[2]
End101,731,991 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • muscle of thigh

  • prefrontal cortex

  • monocyte

  • granulocyte

  • islet of Langerhans

  • C1 segment

  • anterior cingulate cortex

  • right adrenal gland

  • ganglionic eminence

  • right frontal lobe
Top expressed in
  • yolk sac

  • muscle of thigh

  • right kidney

  • lip

  • masseter muscle

  • ventricular zone

  • proximal tubule

  • ganglionic eminence

  • neural tube

  • skeletal muscle tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • protein binding
Cellular component
  • cytoplasmic vesicle
  • extracellular region
  • nucleus
  • Golgi apparatus
  • cytosol
  • secretory granule lumen
  • ficolin-1-rich granule lumen
Biological process
  • regulation of transcription, DNA-templated
  • ion transport
  • transcription, DNA-templated
  • sodium ion transport
  • neutrophil degranulation
  • cholesterol homeostasis
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

29099

76501

Ensembl

ENSG00000110442

ENSMUSG00000027163

UniProt

Q9P000

Q8K2Q0

RefSeq (mRNA)

NM_001101653
NM_001307932
NM_001307937
NM_014186
NM_207428

NM_029635

RefSeq (protein)

NP_001095123
NP_001294861
NP_001294866
NP_054905

NP_083911

Location (UCSC)Chr 11: 36.27 – 36.29 MbChr 2: 101.72 – 101.73 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

COMM domain-containing protein 9 is a protein that in humans is encoded by the COMMD9 gene.[5][6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000110442 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000027163 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Burstein E, Hoberg JE, Wilkinson AS, Rumble JM, Csomos RA, Komarck CM, Maine GN, Wilkinson JC, Mayo MW, Duckett CS (Jun 2005). "COMMD proteins, a novel family of structural and functional homologs of MURR1". J Biol Chem. 280 (23): 22222–32. doi:10.1074/jbc.M501928200. PMID 15799966.
  6. ^ "Entrez Gene: COMMD9 COMM domain containing 9".

External links

Further reading

  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Zhang QH, Ye M, Wu XY, et al. (2001). "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells". Genome Res. 10 (10): 1546–60. doi:10.1101/gr.140200. PMC 310934. PMID 11042152.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.


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